Python for Bioinformatics

Python for Bioinformatics is an essential resource for anyone looking to integrate programming into their biological research. As the field of bioinformatics continues to expand, the ability to analyze vast amounts of biological data becomes increasingly crucial.

This book introduces bioinformatics, blending Python programming with biological data analysis. It covers essentials like string handling, regular expressions, file I/O, and object-oriented programming. You will explore Biopython for sequence alignment, format parsing, and accessing biological databases. Learn data visualization with Matplotlib and apply bioinformatics techniques like sequence alignment and phylogenetic analysis. The final chapter includes hands-on mini-projects to solidify your understanding, making it a practical guide for mastering bioinformatics and Python in real-world applications.

By bridging the gap between biology and computational science, this book empowers readers to tackle real-world challenges in their learning. With clear explanations and practical examples, readers will be well-prepared to apply Python for understanding biological data, contributing to advancements in the field of bioinformatics.

KEY FEATURES  

• Comprehensive Python guide tailored for bioinformatics applications.
• Hands-on projects to solidify concepts and enhance practical skills.
• In-depth exploration of Python for its efficient use in bioinformatics.

WHAT YOU WILL LEARN

• Understand core Python programming concepts for data analysis.
• Manipulate and analyze biological data effectively using Python.
• Create and manage functions and modules in Python code.
• Visualize complex datasets to identify patterns and insights.
• Implement file-handling techniques for various data types.
• Apply programming skills to real-world bioinformatics projects.

WHO THIS BOOK IS FOR

This book is ideal for students, researchers, and professionals in fields like biology, computer science, and biotechnology who seek to understand and apply bioinformatics techniques to analyze biological data and solve real-world problems.

1. Introduction to Bioinformatics and its Applications 
2. Bioinformatics and its Use Cases
3. Introduction to Python and Basic Programming
4. String Handling, Modular Programming, and Data Structures
5. File Handling and Object Oriented Concept
6. Basic Concept of Biopython Module
7. Pattern Matching with Regular Expression
8. Data Handling and Visualization in Bioinformatics
9. Mini Applications in Bioinformatics
10. Mini Projects on Bioinformatics

Dr. Parul Verma has been working as a faculty member at Amity Institute of Information Technology, Amity University, Uttar Pradesh, Lucknow. Her research interests are natural language processing, web mining, deep mining, Semantic Web, Edge and IoT. She has published and presented almost 50 papers in Scopus and other indexed National and International Journals and Conferences. She has been actively involved in research being as a supervisor to Research Scholars and Post Graduate students. She has also edited a book titled Artificial Intelligence and Machine Learning for Edge Computing published by Elsevier. She has been nominated as a member of Technical Program Committee and Organizing Committee of many International Conferences. She is also a member of many International and National bodies like Association for Computing Machinery (ACM), International Association of Engineers (IAENG), International Association of Computer Science and Information Technology (IACSIT), Internet Society.

Dr. Shahnaz Fatima is a faculty member at the Amity Institute of Information Technology, Amity University, Uttar Pradesh, Lucknow. Her research interests are human-computer interaction, data mining, deep learning, the Semantic Web, and Edge computing in IoT. She is actively involved in supervising both Doctorate Research Scholars and postgraduate students. She has authored numerous impactful research papers published in Scopus-indexed journals, as well as various national and international conferences. Additionally, she edited the book Distributed Computing to Blockchain: Architecture, Technology, and Applications, published by Elsevier and also indexed by Scopus. She is a member of the International Association of Computer Science and Information Technology (IACSIT) and the International Association of Engineers (IAENG).